EIK98477.1 protein (Pseudomonas sp. M47T1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EIK98477.1

Protein SpuD/PotF1; COG0687 Spermidine/putrescine-binding periplasmic protein. (365 aa)

Predicted Functional Partners:

EIK98479.1

0.957

EIK95710.1

0.956

EIK98480.1

0.953

potA

0.952

EIK95709.1

0.897

EIK97768.1

0.877

EIK94165.1

0.872

EIK94166.1

0.853

EIK98739.1

0.852

EIK98738.1

0.839

Your Current Organism:

Pseudomonas sp. M47T1

NCBI taxonomy Id: 1179778
Other names: P. sp. M47T1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIK94165.1	EIK94166.1	PMM47T1_23167	PMM47T1_23172	Binding-protein dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	Binding-protein dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	0.993
EIK94165.1	EIK95710.1	PMM47T1_23167	PMM47T1_15031	Binding-protein dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	ABC transporter permease; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	0.924
EIK94165.1	EIK97768.1	PMM47T1_23167	PMM47T1_04629	Binding-protein dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	ABC transporter permease; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	0.932
EIK94165.1	EIK98477.1	PMM47T1_23167	PMM47T1_00515	Binding-protein dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	Protein SpuD/PotF1; COG0687 Spermidine/putrescine-binding periplasmic protein.	0.872
EIK94165.1	EIK98480.1	PMM47T1_23167	PMM47T1_00530	Binding-protein dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	COG1177 ABC-type spermidine/putrescine transport system, permease component II.	0.924
EIK94165.1	EIK98739.1	PMM47T1_23167	PMM47T1_01835	Binding-protein dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	Binding-protein-dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	0.971
EIK94165.1	potA	PMM47T1_23167	PMM47T1_00520	Binding-protein dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	Spermidine/putrescine ABC transporter ATPase; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.880
EIK94166.1	EIK94165.1	PMM47T1_23172	PMM47T1_23167	Binding-protein dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	Binding-protein dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	0.993
EIK94166.1	EIK95709.1	PMM47T1_23172	PMM47T1_15026	Binding-protein dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	Permidine/putrescine ABC transporter inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	0.878
EIK94166.1	EIK95710.1	PMM47T1_23172	PMM47T1_15031	Binding-protein dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	ABC transporter permease; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	0.520
EIK94166.1	EIK97768.1	PMM47T1_23172	PMM47T1_04629	Binding-protein dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	ABC transporter permease; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	0.494
EIK94166.1	EIK98477.1	PMM47T1_23172	PMM47T1_00515	Binding-protein dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	Protein SpuD/PotF1; COG0687 Spermidine/putrescine-binding periplasmic protein.	0.853
EIK94166.1	EIK98479.1	PMM47T1_23172	PMM47T1_00525	Binding-protein dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	Binding-protein dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	0.880
EIK94166.1	EIK98480.1	PMM47T1_23172	PMM47T1_00530	Binding-protein dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	COG1177 ABC-type spermidine/putrescine transport system, permease component II.	0.468
EIK94166.1	EIK98738.1	PMM47T1_23172	PMM47T1_01830	Binding-protein dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	Binding-protein dependent transport system inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	0.977
EIK94166.1	potA	PMM47T1_23172	PMM47T1_00520	Binding-protein dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	Spermidine/putrescine ABC transporter ATPase; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.869
EIK95709.1	EIK94166.1	PMM47T1_15026	PMM47T1_23172	Permidine/putrescine ABC transporter inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	Binding-protein dependent transport system inner membrane protein; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	0.878
EIK95709.1	EIK95710.1	PMM47T1_15026	PMM47T1_15031	Permidine/putrescine ABC transporter inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	ABC transporter permease; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	0.979
EIK95709.1	EIK97768.1	PMM47T1_15026	PMM47T1_04629	Permidine/putrescine ABC transporter inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	ABC transporter permease; COG1177 ABC-type spermidine/putrescine transport system, permease component II.	0.948
EIK95709.1	EIK98477.1	PMM47T1_15026	PMM47T1_00515	Permidine/putrescine ABC transporter inner membrane protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.	Protein SpuD/PotF1; COG0687 Spermidine/putrescine-binding periplasmic protein.	0.897